Installation instructions

Requirements

The cnnclustering package is developed and tested in Python >=3.6. At runtime the package has a few mandatory third party dependencies. We recommend to install the latest version of:

• numpy

• PyYAML

• tqdm

Optionally, additional functionality is available when the following packages are installed as well:

• matplotlib

• pandas

• networkx

• scipy

• sklearn

PyPi

pip install cnnclustering

Developement installation

Clone the source repository https://github.com/janjoswig/CommonNNClustering and use the package cnnclustering as you prefer it, e.g. install it via pip in editable mode.

$ git clone https://github.com/janjoswig/CommonNNClustering
$ cd CommonNNClustering
$ pip install -e .

To recompile the Cython-extensions (requires cython installed) use:

$ python setup.py build_ext --inplace